Two way ANOVA  overview
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Two way ANOVA  Friedman test  One sample $z$ test for the mean 


Independent/grouping variables  Independent/grouping variable  Independent variable  
Two categorical, the first with $I$ independent groups and the second with $J$ independent groups ($I \geqslant 2$, $J \geqslant 2$)  One within subject factor ($\geq 2$ related groups)  None  
Dependent variable  Dependent variable  Dependent variable  
One quantitative of interval or ratio level  One of ordinal level  One quantitative of interval or ratio level  
Null hypothesis  Null hypothesis  Null hypothesis  
ANOVA $F$ tests:
 H_{0}: the population scores in any of the related groups are not systematically higher or lower than the population scores in any of the other related groups
Usually the related groups are the different measurement points. Several different formulations of the null hypothesis can be found in the literature, and we do not agree with all of them. Make sure you (also) learn the one that is given in your text book or by your teacher.  H_{0}: $\mu = \mu_0$
Here $\mu$ is the population mean, and $\mu_0$ is the population mean according to the null hypothesis.  
Alternative hypothesis  Alternative hypothesis  Alternative hypothesis  
ANOVA $F$ tests:
 H_{1}: the population scores in some of the related groups are systematically higher or lower than the population scores in other related groups  H_{1} two sided: $\mu \neq \mu_0$ H_{1} right sided: $\mu > \mu_0$ H_{1} left sided: $\mu < \mu_0$  
Assumptions  Assumptions  Assumptions  


 
Test statistic  Test statistic  Test statistic  
For main and interaction effects together (model):
 $Q = \dfrac{12}{N \times k(k + 1)} \sum R^2_i  3 \times N(k + 1)$
Here $N$ is the number of 'blocks' (usually the subjects  so if you have 4 repeated measurements for 60 subjects, $N$ equals 60), $k$ is the number of related groups (usually the number of repeated measurements), and $R_i$ is the sum of ranks in group $i$. Remember that multiplication precedes addition, so first compute $\frac{12}{N \times k(k + 1)} \times \sum R^2_i$ and then subtract $3 \times N(k + 1)$. Note: if ties are present in the data, the formula for $Q$ is more complicated.  $z = \dfrac{\bar{y}  \mu_0}{\sigma / \sqrt{N}}$
Here $\bar{y}$ is the sample mean, $\mu_0$ is the population mean according to the null hypothesis, $\sigma$ is the population standard deviation, and $N$ is the sample size. The denominator $\sigma / \sqrt{N}$ is the standard deviation of the sampling distribution of $\bar{y}$. The $z$ value indicates how many of these standard deviations $\bar{y}$ is removed from $\mu_0$.  
Pooled standard deviation  n.a.  n.a.  
$ \begin{aligned} s_p &= \sqrt{\dfrac{\sum\nolimits_{subjects} (\mbox{subject's score}  \mbox{its group mean})^2}{N  (I \times J)}}\\ &= \sqrt{\dfrac{\mbox{sum of squares error}}{\mbox{degrees of freedom error}}}\\ &= \sqrt{\mbox{mean square error}} \end{aligned} $      
Sampling distribution of $F$ if H_{0} were true  Sampling distribution of $Q$ if H_{0} were true  Sampling distribution of $z$ if H_{0} were true  
For main and interaction effects together (model):
 If the number of blocks $N$ is large, approximately the chisquared distribution with $k  1$ degrees of freedom.
For small samples, the exact distribution of $Q$ should be used.  Standard normal distribution  
Significant?  Significant?  Significant?  
 If the number of blocks $N$ is large, the table with critical $X^2$ values can be used. If we denote $X^2 = Q$:
 Two sided:
 
n.a.  n.a.  $C\%$ confidence interval for $\mu$  
    $\bar{y} \pm z^* \times \dfrac{\sigma}{\sqrt{N}}$
where the critical value $z^*$ is the value under the normal curve with the area $C / 100$ between $z^*$ and $z^*$ (e.g. $z^*$ = 1.96 for a 95% confidence interval). The confidence interval for $\mu$ can also be used as significance test.  
Effect size  n.a.  Effect size  
   Cohen's $d$: Standardized difference between the sample mean and $\mu_0$: $$d = \frac{\bar{y}  \mu_0}{\sigma}$$ Cohen's $d$ indicates how many standard deviations $\sigma$ the sample mean $\bar{y}$ is removed from $\mu_0.$  
n.a.  n.a.  Visual representation  
    
ANOVA table  n.a.  n.a.  
    
Equivalent to  n.a.  n.a.  
OLS regression with two categorical independent variables and the interaction term, transformed into $(I  1)$ + $(J  1)$ + $(I  1) \times (J  1)$ code variables.      
Example context  Example context  Example context  
Is the average mental health score different between people from a low, moderate, and high economic class? And is the average mental health score different between men and women? And is there an interaction effect between economic class and gender?  Is there a difference in depression level between measurement point 1 (preintervention), measurement point 2 (1 week postintervention), and measurement point 3 (6 weeks postintervention)?  Is the average mental health score of office workers different from $\mu_0 = 50$? Assume that the standard deviation of the mental health scores in the population is $\sigma = 3.$  
SPSS  SPSS  n.a.  
Analyze > General Linear Model > Univariate...
 Analyze > Nonparametric Tests > Legacy Dialogs > K Related Samples...
   
Jamovi  Jamovi  n.a.  
ANOVA > ANOVA
 ANOVA > Repeated Measures ANOVA  Friedman
   
Practice questions  Practice questions  Practice questions  