Two way ANOVA - overview
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Two way ANOVA | Paired sample $t$ test | One sample $t$ test for the mean |
You cannot compare more than 3 methods |
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Independent/grouping variables | Independent variable | Independent variable | |
Two categorical, the first with $I$ independent groups and the second with $J$ independent groups ($I \geqslant 2$, $J \geqslant 2$) | 2 paired groups | None | |
Dependent variable | Dependent variable | Dependent variable | |
One quantitative of interval or ratio level | One quantitative of interval or ratio level | One quantitative of interval or ratio level | |
Null hypothesis | Null hypothesis | Null hypothesis | |
ANOVA $F$ tests:
| H0: $\mu = \mu_0$
Here $\mu$ is the population mean of the difference scores, and $\mu_0$ is the population mean of the difference scores according to the null hypothesis, which is usually 0. A difference score is the difference between the first score of a pair and the second score of a pair. | H0: $\mu = \mu_0$
Here $\mu$ is the population mean, and $\mu_0$ is the population mean according to the null hypothesis. | |
Alternative hypothesis | Alternative hypothesis | Alternative hypothesis | |
ANOVA $F$ tests:
| H1 two sided: $\mu \neq \mu_0$ H1 right sided: $\mu > \mu_0$ H1 left sided: $\mu < \mu_0$ | H1 two sided: $\mu \neq \mu_0$ H1 right sided: $\mu > \mu_0$ H1 left sided: $\mu < \mu_0$ | |
Assumptions | Assumptions | Assumptions | |
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Test statistic | Test statistic | Test statistic | |
For main and interaction effects together (model):
| $t = \dfrac{\bar{y} - \mu_0}{s / \sqrt{N}}$
Here $\bar{y}$ is the sample mean of the difference scores, $\mu_0$ is the population mean of the difference scores according to the null hypothesis, $s$ is the sample standard deviation of the difference scores, and $N$ is the sample size (number of difference scores). The denominator $s / \sqrt{N}$ is the standard error of the sampling distribution of $\bar{y}$. The $t$ value indicates how many standard errors $\bar{y}$ is removed from $\mu_0$. | $t = \dfrac{\bar{y} - \mu_0}{s / \sqrt{N}}$
Here $\bar{y}$ is the sample mean, $\mu_0$ is the population mean according to the null hypothesis, $s$ is the sample standard deviation, and $N$ is the sample size. The denominator $s / \sqrt{N}$ is the standard error of the sampling distribution of $\bar{y}$. The $t$ value indicates how many standard errors $\bar{y}$ is removed from $\mu_0$. | |
Pooled standard deviation | n.a. | n.a. | |
$ \begin{aligned} s_p &= \sqrt{\dfrac{\sum\nolimits_{subjects} (\mbox{subject's score} - \mbox{its group mean})^2}{N - (I \times J)}}\\ &= \sqrt{\dfrac{\mbox{sum of squares error}}{\mbox{degrees of freedom error}}}\\ &= \sqrt{\mbox{mean square error}} \end{aligned} $ | - | - | |
Sampling distribution of $F$ if H0 were true | Sampling distribution of $t$ if H0 were true | Sampling distribution of $t$ if H0 were true | |
For main and interaction effects together (model):
| $t$ distribution with $N - 1$ degrees of freedom | $t$ distribution with $N - 1$ degrees of freedom | |
Significant? | Significant? | Significant? | |
| Two sided:
| Two sided:
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n.a. | $C\%$ confidence interval for $\mu$ | $C\%$ confidence interval for $\mu$ | |
- | $\bar{y} \pm t^* \times \dfrac{s}{\sqrt{N}}$
where the critical value $t^*$ is the value under the $t_{N-1}$ distribution with the area $C / 100$ between $-t^*$ and $t^*$ (e.g. $t^*$ = 2.086 for a 95% confidence interval when df = 20). The confidence interval for $\mu$ can also be used as significance test. | $\bar{y} \pm t^* \times \dfrac{s}{\sqrt{N}}$
where the critical value $t^*$ is the value under the $t_{N-1}$ distribution with the area $C / 100$ between $-t^*$ and $t^*$ (e.g. $t^*$ = 2.086 for a 95% confidence interval when df = 20). The confidence interval for $\mu$ can also be used as significance test. | |
Effect size | Effect size | Effect size | |
| Cohen's $d$: Standardized difference between the sample mean of the difference scores and $\mu_0$: $$d = \frac{\bar{y} - \mu_0}{s}$$ Cohen's $d$ indicates how many standard deviations $s$ the sample mean of the difference scores $\bar{y}$ is removed from $\mu_0.$ | Cohen's $d$: Standardized difference between the sample mean and $\mu_0$: $$d = \frac{\bar{y} - \mu_0}{s}$$ Cohen's $d$ indicates how many standard deviations $s$ the sample mean $\bar{y}$ is removed from $\mu_0.$ | |
n.a. | Visual representation | Visual representation | |
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ANOVA table | n.a. | n.a. | |
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Equivalent to | Equivalent to | n.a. | |
OLS regression with two categorical independent variables and the interaction term, transformed into $(I - 1)$ + $(J - 1)$ + $(I - 1) \times (J - 1)$ code variables. |
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Example context | Example context | Example context | |
Is the average mental health score different between people from a low, moderate, and high economic class? And is the average mental health score different between men and women? And is there an interaction effect between economic class and gender? | Is the average difference between the mental health scores before and after an intervention different from $\mu_0 = 0$? | Is the average mental health score of office workers different from $\mu_0 = 50$? | |
SPSS | SPSS | SPSS | |
Analyze > General Linear Model > Univariate...
| Analyze > Compare Means > Paired-Samples T Test...
| Analyze > Compare Means > One-Sample T Test...
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Jamovi | Jamovi | Jamovi | |
ANOVA > ANOVA
| T-Tests > Paired Samples T-Test
| T-Tests > One Sample T-Test
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Practice questions | Practice questions | Practice questions | |