Paired sample t test overview

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Paired sample $t$ test	Chi-squared test for the relationship between two categorical variables	Two sample $z$ test
Independent variable	Independent /column variable	Independent/grouping variable
2 paired groups	One categorical with $I$ independent groups ($I \geqslant 2$)	One categorical with 2 independent groups
Dependent variable	Dependent /row variable	Dependent variable
One quantitative of interval or ratio level	One categorical with $J$ independent groups ($J \geqslant 2$)	One quantitative of interval or ratio level
Null hypothesis	Null hypothesis	Null hypothesis
H₀: $\mu = \mu_0$ Here $\mu$ is the population mean of the difference scores, and $\mu_0$ is the population mean of the difference scores according to the null hypothesis, which is usually 0. A difference score is the difference between the first score of a pair and the second score of a pair.	H₀: there is no association between the row and column variable More precisely, if there are $I$ independent random samples of size $n_i$ from each of $I$ populations, defined by the independent variable: H₀: the distribution of the dependent variable is the same in each of the $I$ populations If there is one random sample of size $N$ from the total population: H₀: the row and column variables are independent	H₀: $\mu_1 = \mu_2$ Here $\mu_1$ is the population mean for group 1, and $\mu_2$ is the population mean for group 2.
Alternative hypothesis	Alternative hypothesis	Alternative hypothesis
H₁ two sided: $\mu \neq \mu_0$ H₁ right sided: $\mu > \mu_0$ H₁ left sided: $\mu < \mu_0$	H₁: there is an association between the row and column variable More precisely, if there are $I$ independent random samples of size $n_i$ from each of $I$ populations, defined by the independent variable: H₁: the distribution of the dependent variable is not the same in all of the $I$ populations If there is one random sample of size $N$ from the total population: H₁: the row and column variables are dependent	H₁ two sided: $\mu_1 \neq \mu_2$ H₁ right sided: $\mu_1 > \mu_2$ H₁ left sided: $\mu_1 < \mu_2$
Assumptions	Assumptions	Assumptions
Difference scores are normally distributed in the population Sample of difference scores is a simple random sample from the population of difference scores. That is, difference scores are independent of one another	Sample size is large enough for $X^2$ to be approximately chi-squared distributed under the null hypothesis. Rule of thumb: 2 $\times$ 2 table: all four expected cell counts are 5 or more Larger than 2 $\times$ 2 tables: average of the expected cell counts is 5 or more, smallest expected cell count is 1 or more There are $I$ independent simple random samples from each of $I$ populations defined by the independent variable, or there is one simple random sample from the total population	Within each population, the scores on the dependent variable are normally distributed Population standard deviations $\sigma_1$ and $\sigma_2$ are known Group 1 sample is a simple random sample (SRS) from population 1, group 2 sample is an independent SRS from population 2. That is, within and between groups, observations are independent of one another
Test statistic	Test statistic	Test statistic
$t = \dfrac{\bar{y} - \mu_0}{s / \sqrt{N}}$ Here $\bar{y}$ is the sample mean of the difference scores, $\mu_0$ is the population mean of the difference scores according to the null hypothesis, $s$ is the sample standard deviation of the difference scores, and $N$ is the sample size (number of difference scores). The denominator $s / \sqrt{N}$ is the standard error of the sampling distribution of $\bar{y}$. The $t$ value indicates how many standard errors $\bar{y}$ is removed from $\mu_0$.	$X^2 = \sum{\frac{(\mbox{observed cell count} - \mbox{expected cell count})^2}{\mbox{expected cell count}}}$ Here for each cell, the expected cell count = $\dfrac{\mbox{row total} \times \mbox{column total}}{\mbox{total sample size}}$, the observed cell count is the observed sample count in that same cell, and the sum is over all $I \times J$ cells.	$z = \dfrac{(\bar{y}_1 - \bar{y}_2) - 0}{\sqrt{\dfrac{\sigma^2_1}{n_1} + \dfrac{\sigma^2_2}{n_2}}} = \dfrac{\bar{y}_1 - \bar{y}_2}{\sqrt{\dfrac{\sigma^2_1}{n_1} + \dfrac{\sigma^2_2}{n_2}}}$ Here $\bar{y}_1$ is the sample mean in group 1, $\bar{y}_2$ is the sample mean in group 2, $\sigma^2_1$ is the population variance in population 1, $\sigma^2_2$ is the population variance in population 2, $n_1$ is the sample size of group 1, and $n_2$ is the sample size of group 2. The 0 represents the difference in population means according to the null hypothesis. The denominator $\sqrt{\frac{\sigma^2_1}{n_1} + \frac{\sigma^2_2}{n_2}}$ is the standard deviation of the sampling distribution of $\bar{y}_1 - \bar{y}_2$. The $z$ value indicates how many of these standard deviations $\bar{y}_1 - \bar{y}_2$ is removed from 0. Note: we could just as well compute $\bar{y}_2 - \bar{y}_1$ in the numerator, but then the left sided alternative becomes $\mu_2 < \mu_1$, and the right sided alternative becomes $\mu_2 > \mu_1$.
Sampling distribution of $t$ if H₀ were true	Sampling distribution of $X^2$ if H₀ were true	Sampling distribution of $z$ if H₀ were true
$t$ distribution with $N - 1$ degrees of freedom	Approximately the chi-squared distribution with $(I - 1) \times (J - 1)$ degrees of freedom	Standard normal distribution
Significant?	Significant?	Significant?
Two sided: Check if $t$ observed in sample is at least as extreme as critical value $t^$ or Find two sided $p$ value corresponding to observed $t$ and check if it is equal to or smaller than $\alpha$ Right sided: Check if $t$ observed in sample is equal to or larger than critical value $t^$ or Find right sided $p$ value corresponding to observed $t$ and check if it is equal to or smaller than $\alpha$ Left sided: Check if $t$ observed in sample is equal to or smaller than critical value $t^*$ or Find left sided $p$ value corresponding to observed $t$ and check if it is equal to or smaller than $\alpha$	Check if $X^2$ observed in sample is equal to or larger than critical value $X^{2*}$ or Find $p$ value corresponding to observed $X^2$ and check if it is equal to or smaller than $\alpha$	Two sided: Check if $z$ observed in sample is at least as extreme as critical value $z^$ or Find two sided $p$ value corresponding to observed $z$ and check if it is equal to or smaller than $\alpha$ Right sided: Check if $z$ observed in sample is equal to or larger than critical value $z^$ or Find right sided $p$ value corresponding to observed $z$ and check if it is equal to or smaller than $\alpha$ Left sided: Check if $z$ observed in sample is equal to or smaller than critical value $z^*$ or Find left sided $p$ value corresponding to observed $z$ and check if it is equal to or smaller than $\alpha$
$C\%$ confidence interval for $\mu$	n.a.	$C\%$ confidence interval for $\mu_1 - \mu_2$
$\bar{y} \pm t^* \times \dfrac{s}{\sqrt{N}}$ where the critical value $t^$ is the value under the $t_{N-1}$ distribution with the area $C / 100$ between $-t^$ and $t^$ (e.g. $t^$ = 2.086 for a 95% confidence interval when df = 20). The confidence interval for $\mu$ can also be used as significance test.	-	$(\bar{y}_1 - \bar{y}_2) \pm z^* \times \sqrt{\dfrac{\sigma^2_1}{n_1} + \dfrac{\sigma^2_2}{n_2}}$ where the critical value $z^$ is the value under the normal curve with the area $C / 100$ between $-z^$ and $z^$ (e.g. $z^$ = 1.96 for a 95% confidence interval). The confidence interval for $\mu_1 - \mu_2$ can also be used as significance test.
Effect size	n.a.	n.a.
Cohen's $d$: Standardized difference between the sample mean of the difference scores and $\mu_0$: $$d = \frac{\bar{y} - \mu_0}{s}$$ Cohen's $d$ indicates how many standard deviations $s$ the sample mean of the difference scores $\bar{y}$ is removed from $\mu_0.$	-	-
Visual representation	n.a.	Visual representation
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Equivalent to	n.a.	n.a.
One sample $t$ test on the difference scores. Repeated measures ANOVA with one dichotomous within subjects factor.	-	-
Example context	Example context	Example context
Is the average difference between the mental health scores before and after an intervention different from $\mu_0 = 0$?	Is there an association between economic class and gender? Is the distribution of economic class different between men and women?	Is the average mental health score different between men and women? Assume that in the population, the standard devation of the mental health scores is $\sigma_1 = 2$ amongst men and $\sigma_2 = 2.5$ amongst women.
SPSS	SPSS	n.a.
Analyze > Compare Means > Paired-Samples T Test... Put the two paired variables in the boxes below Variable 1 and Variable 2	Analyze > Descriptive Statistics > Crosstabs... Put one of your two categorical variables in the box below Row(s), and the other categorical variable in the box below Column(s) Click the Statistics... button, and click on the square in front of Chi-square Continue and click OK	-
Jamovi	Jamovi	n.a.
T-Tests > Paired Samples T-Test Put the two paired variables in the box below Paired Variables, one on the left side of the vertical line and one on the right side of the vertical line Under Hypothesis, select your alternative hypothesis	Frequencies > Independent Samples - $\chi^2$ test of association Put one of your two categorical variables in the box below Rows, and the other categorical variable in the box below Columns	-
Practice questions	Practice questions	Practice questions

Paired sample t test - overview