Two sample t test - equal variances not assumed - overview
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Two sample $t$ test - equal variances not assumed | Cochran's Q test | Wilcoxon signed-rank test | Logistic regression |
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Independent/grouping variable | Independent/grouping variable | Independent variable | Independent variables | |
One categorical with 2 independent groups | One within subject factor ($\geq 2$ related groups) | 2 paired groups | One or more quantitative of interval or ratio level and/or one or more categorical with independent groups, transformed into code variables | |
Dependent variable | Dependent variable | Dependent variable | Dependent variable | |
One quantitative of interval or ratio level | One categorical with 2 independent groups | One quantitative of interval or ratio level | One categorical with 2 independent groups | |
Null hypothesis | Null hypothesis | Null hypothesis | Null hypothesis | |
H0: $\mu_1 = \mu_2$
Here $\mu_1$ is the population mean for group 1, and $\mu_2$ is the population mean for group 2. | H0: $\pi_1 = \pi_2 = \ldots = \pi_I$
Here $\pi_1$ is the population proportion of 'successes' for group 1, $\pi_2$ is the population proportion of 'successes' for group 2, and $\pi_I$ is the population proportion of 'successes' for group $I.$ | H0: $m = 0$
Here $m$ is the population median of the difference scores. A difference score is the difference between the first score of a pair and the second score of a pair. Several different formulations of the null hypothesis can be found in the literature, and we do not agree with all of them. Make sure you (also) learn the one that is given in your text book or by your teacher. | Model chi-squared test for the complete regression model:
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Alternative hypothesis | Alternative hypothesis | Alternative hypothesis | Alternative hypothesis | |
H1 two sided: $\mu_1 \neq \mu_2$ H1 right sided: $\mu_1 > \mu_2$ H1 left sided: $\mu_1 < \mu_2$ | H1: not all population proportions are equal | H1 two sided: $m \neq 0$ H1 right sided: $m > 0$ H1 left sided: $m < 0$ | Model chi-squared test for the complete regression model:
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Assumptions | Assumptions | Assumptions | Assumptions | |
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Test statistic | Test statistic | Test statistic | Test statistic | |
$t = \dfrac{(\bar{y}_1 - \bar{y}_2) - 0}{\sqrt{\dfrac{s^2_1}{n_1} + \dfrac{s^2_2}{n_2}}} = \dfrac{\bar{y}_1 - \bar{y}_2}{\sqrt{\dfrac{s^2_1}{n_1} + \dfrac{s^2_2}{n_2}}}$
Here $\bar{y}_1$ is the sample mean in group 1, $\bar{y}_2$ is the sample mean in group 2, $s^2_1$ is the sample variance in group 1, $s^2_2$ is the sample variance in group 2, $n_1$ is the sample size of group 1, and $n_2$ is the sample size of group 2. The 0 represents the difference in population means according to the null hypothesis. The denominator $\sqrt{\frac{s^2_1}{n_1} + \frac{s^2_2}{n_2}}$ is the standard error of the sampling distribution of $\bar{y}_1 - \bar{y}_2$. The $t$ value indicates how many standard errors $\bar{y}_1 - \bar{y}_2$ is removed from 0. Note: we could just as well compute $\bar{y}_2 - \bar{y}_1$ in the numerator, but then the left sided alternative becomes $\mu_2 < \mu_1$, and the right sided alternative becomes $\mu_2 > \mu_1$. | If a failure is scored as 0 and a success is scored as 1:
$Q = k(k - 1) \dfrac{\sum_{groups} \Big (\mbox{group total} - \frac{\mbox{grand total}}{k} \Big)^2}{\sum_{blocks} \mbox{block total} \times (k - \mbox{block total})}$ Here $k$ is the number of related groups (usually the number of repeated measurements), a group total is the sum of the scores in a group, a block total is the sum of the scores in a block (usually a subject), and the grand total is the sum of all the scores. Before computing $Q$, first exclude blocks with equal scores in all $k$ groups. | Two different types of test statistics can be used, but both will result in the same test outcome. We will denote the first option the $W_1$ statistic (also known as the $T$ statistic), and the second option the $W_2$ statistic.
In order to compute each of the test statistics, follow the steps below:
| Model chi-squared test for the complete regression model:
The wald statistic can be defined in two ways:
Likelihood ratio chi-squared test for individual $\beta_k$:
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Sampling distribution of $t$ if H0 were true | Sampling distribution of $Q$ if H0 were true | Sampling distribution of $W_1$ and of $W_2$ if H0 were true | Sampling distribution of $X^2$ and of the Wald statistic if H0 were true | |
Approximately the $t$ distribution with $k$ degrees of freedom, with $k$ equal to $k = \dfrac{\Bigg(\dfrac{s^2_1}{n_1} + \dfrac{s^2_2}{n_2}\Bigg)^2}{\dfrac{1}{n_1 - 1} \Bigg(\dfrac{s^2_1}{n_1}\Bigg)^2 + \dfrac{1}{n_2 - 1} \Bigg(\dfrac{s^2_2}{n_2}\Bigg)^2}$ or $k$ = the smaller of $n_1$ - 1 and $n_2$ - 1 First definition of $k$ is used by computer programs, second definition is often used for hand calculations. | If the number of blocks (usually the number of subjects) is large, approximately the chi-squared distribution with $k - 1$ degrees of freedom | Sampling distribution of $W_1$:
If $N_r$ is large, $W_1$ is approximately normally distributed with mean $\mu_{W_1}$ and standard deviation $\sigma_{W_1}$ if the null hypothesis were true. Here $$\mu_{W_1} = \frac{N_r(N_r + 1)}{4}$$ $$\sigma_{W_1} = \sqrt{\frac{N_r(N_r + 1)(2N_r + 1)}{24}}$$ Hence, if $N_r$ is large, the standardized test statistic $$z = \frac{W_1 - \mu_{W_1}}{\sigma_{W_1}}$$ follows approximately the standard normal distribution if the null hypothesis were true. Sampling distribution of $W_2$: If $N_r$ is large, $W_2$ is approximately normally distributed with mean $0$ and standard deviation $\sigma_{W_2}$ if the null hypothesis were true. Here $$\sigma_{W_2} = \sqrt{\frac{N_r(N_r + 1)(2N_r + 1)}{6}}$$ Hence, if $N_r$ is large, the standardized test statistic $$z = \frac{W_2}{\sigma_{W_2}}$$ follows approximately the standard normal distribution if the null hypothesis were true. If $N_r$ is small, the exact distribution of $W_1$ or $W_2$ should be used. Note: if ties are present in the data, the formula for the standard deviations $\sigma_{W_1}$ and $\sigma_{W_2}$ is more complicated. | Sampling distribution of $X^2$, as computed in the model chi-squared test for the complete model:
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Significant? | Significant? | Significant? | Significant? | |
Two sided:
| If the number of blocks is large, the table with critical $X^2$ values can be used. If we denote $X^2 = Q$:
| For large samples, the table for standard normal probabilities can be used: Two sided:
| For the model chi-squared test for the complete regression model and likelihood ratio chi-squared test for individual $\beta_k$:
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Approximate $C\%$ confidence interval for $\mu_1 - \mu_2$ | n.a. | n.a. | Wald-type approximate $C\%$ confidence interval for $\beta_k$ | |
$(\bar{y}_1 - \bar{y}_2) \pm t^* \times \sqrt{\dfrac{s^2_1}{n_1} + \dfrac{s^2_2}{n_2}}$
where the critical value $t^*$ is the value under the $t_{k}$ distribution with the area $C / 100$ between $-t^*$ and $t^*$ (e.g. $t^*$ = 2.086 for a 95% confidence interval when df = 20). The confidence interval for $\mu_1 - \mu_2$ can also be used as significance test. | - | - | $b_k \pm z^* \times SE_{b_k}$ where the critical value $z^*$ is the value under the normal curve with the area $C / 100$ between $-z^*$ and $z^*$ (e.g. $z^*$ = 1.96 for a 95% confidence interval). | |
n.a. | n.a. | n.a. | Goodness of fit measure $R^2_L$ | |
- | - | - | $R^2_L = \dfrac{D_{null} - D_K}{D_{null}}$ There are several other goodness of fit measures in logistic regression. In logistic regression, there is no single agreed upon measure of goodness of fit. | |
Visual representation | n.a. | n.a. | n.a. | |
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n.a. | Equivalent to | n.a. | n.a. | |
- | Friedman test, with a categorical dependent variable consisting of two independent groups. | - | - | |
Example context | Example context | Example context | Example context | |
Is the average mental health score different between men and women? | Subjects perform three different tasks, which they can either perform correctly or incorrectly. Is there a difference in task performance between the three different tasks? | Is the median of the differences between the mental health scores before and after an intervention different from 0? | Can body mass index, stress level, and gender predict whether people get diagnosed with diabetes? | |
SPSS | SPSS | SPSS | SPSS | |
Analyze > Compare Means > Independent-Samples T Test...
| Analyze > Nonparametric Tests > Legacy Dialogs > K Related Samples...
| Analyze > Nonparametric Tests > Legacy Dialogs > 2 Related Samples...
| Analyze > Regression > Binary Logistic...
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Jamovi | Jamovi | Jamovi | Jamovi | |
T-Tests > Independent Samples T-Test
| Jamovi does not have a specific option for the Cochran's Q test. However, you can do the Friedman test instead. The $p$ value resulting from this Friedman test is equivalent to the $p$ value that would have resulted from the Cochran's Q test. Go to:
ANOVA > Repeated Measures ANOVA - Friedman
| T-Tests > Paired Samples T-Test
| Regression > 2 Outcomes - Binomial
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Practice questions | Practice questions | Practice questions | Practice questions | |